CLC Main Workbench

From CLC bio:

This 4-week fully functional demo of CLC Combined Workbench aggregates all DNA sequence analyses of CLC Gene Workbench and all protein sequence analyses of CLC Protein Workbench. All analyses are fully integrated in one single, user-friendly, and intuitive software application. Some analyses are - Assembly of DNA sequencing data - Advanced primer design - Molecular cloning - Fully integrated 1D DNA Gel Simulator - Automatic SNP annotation of sequences - Secondary protein structure prediction - Integrated 3D molecular view - Signal Peptide Prediction (SignalP) - Transmembrane helix prediction (TMHMM) - Protein family analysis (PFAM) - 2 types of alignments - Phylogenetics - Motif search (known patterns) - Motif search using regular expressions - Motif search using ProSite patterns - Pattern discovery (unknown patterns) - Web based BLAST - BLAST on local databases - Batch processing of multiple analyses in one work-step - Dot plots - Hydrophobicity analyses - Antigenicity analyses - Searches on GenBank, SwissProt, TrEMBL, and PubMed - Detailed log of actions/analyses performed