pppBenchmark for Windows

Name: pppBenchmark
Rating: 4 (1 reviews)
Author: Thomas Abeel

By Thomas Abeel
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Developer’s Description

By Thomas Abeel

Test and validate newly developed programs on your PC.

pppBenchmark provides a large-scale benchmarking study of 17 state-of-the-art PPPs. A multi-faceted evaluation strategy is proposed that can be used as a gold standard for promoter prediction evaluation, allowing authors of promoter prediction software to compare their method to existing methods in a proper way. This evaluation strategy is subsequently used to compare the chosen promoter predictors and an in-depth analysis on predictive performance, promoter class specificity, overlap between predictors, and positional bias of the predictions is conducted.