InDelFixer for Windows

Name: InDelFixer
Rating: 4 (1 reviews)
Author: Armin Topfer

By Armin Topfer
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Developer’s Description

By Armin Topfer

Remove insertions and replace deleted bases with reference genome.

InDelFixer is java program to remove frame shift causing insertions or deletions from next-generation sequencing data. In some cases it is known that the protein of interest has no variants with frame shifts. These frame shifts can be corrected with a given reference genome (or multiple alignment in a future version). The program accepts standard flow gram formatted files, FASTA / PacBio ccs files, and Illumina paired end data as FASTQ files.