Icon of program: Cytoscape (64-bit)

Cytoscape (64-bit) for Windows

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Editors’ Review

Download.com staff
Cytoscape is an open-source platform for visualizing and analyzing complex networks. Originally for bioinformatics, it now offers general network analysis, integrating diverse attribute data through a core distribution and extensible plugin architecture.

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  • Pros

    • Open source platform for complex network visualization.
    • Integrates networks with diverse attribute data.
    • General platform for complex network analysis.
    • Extensible functionality through community-developed plugins.
    • Open API supports custom plugin creation.

  • Cons

    • Core distribution provides only basic features.
    • Advanced molecular profiling requires plugins.
    • Enhanced layout options are plugin-dependent.
    • Additional file format support needs plugins.
    • Scripting and database connectivity require plugins.
Icon of program: Cytoscape (64-bit)

Cytoscape (64-bit) for Windows

Download now

Used Cytoscape (64-bit) for Windows?

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Full Specifications

GENERAL
Release
Latest update
Version
3.0.1
OPERATING SYSTEMS
Platform
Windows
Operating System
  • Windows Vista
  • Windows 7
  • Windows 8
  • Windows XP
  • Windows 10
Additional Requirements
Java Runtime Environment 5 or 6
POPULARITY
Total Downloads
2,013
Downloads Last Week
6
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Developer’s Description

By Cytoscape Consortium
Visualize complex networks and integrate with any type of attribute data.
Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles, and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape core distribution provides a basic set of features for data integration and visualization. Additional features are available as plugins. Plugins are available for network and molecular profiling analyses, new layouts, additional file format support, scripting, and connection with databases. Plugins may be developed by anyone using the Cytoscape open API based on Java�?�¢?�?�¢ technology and plugin community development is encouraged.
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