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GATE for Windows

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Editors’ Review

Download.com staff
GATE is a computational platform for analyzing and visualizing high-dimensional bio-molecular time-series data. It uses hexagonal arrays and animated movies to help researchers reconstruct networks and perform functional enrichment analyses.

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GATE 0/1

  • Pros

    • Utilizes correlation-based clustering for high-dimensional molecular data organization
    • Generates interactive animated movies of molecular regulatory dynamics
    • Facilitates network reconstruction and functional enrichment analyses
    • Supports interactive interrogation against extensive prior knowledge datasets
    • Enables embedding interactive figures directly into PDF manuscripts

  • Cons

    • Relies on the outdated Flash format for interactive movie exports
    • Visualization limited to a fixed two-dimensional hexagonal array structure
    • Requires specific prior knowledge datasets to infer regulatory control mechanisms
    • Functionality specialized only for high-dimensional time-series expression analysis
Icon of program: GATE

GATE for Windows

Download now

Used GATE for Windows?

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Full Specifications

GENERAL
Release
Latest update
Version
2014
OPERATING SYSTEMS
Platform
Windows
Operating System
  • Windows 10
  • Windows XP
  • Windows Vista
  • Windows 2003
  • Windows NT
  • Windows 7
  • Windows Server
Additional Requirements
None
POPULARITY
Total Downloads
480
Downloads Last Week
1
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Developer’s Description

By Mount Sinai School of Medicine Ma'ayan
Analyse and visualize high-dimensional time-series expression data.
GATE (Grid Analysis of Time-Series Expression) is an integrated computational software platform for the analysis and visualization of high-dimensional bio-molecular time-series. GATE uses a correlation-based clustering algorithm to arrange molecular time-series on a two-dimensional hexagonal array and dynamically colors individual hexagons according to the expression level of the molecular component to which they are assigned, to create animated movies of systems-level molecular regulatory dynamics. In order to infer potential regulatory control mechanisms from patterns of correlation, GATE also allows interactive interrogation of movies against a wide variety of prior knowledge datasets. GATE movies can be paused and are interactive, allowing users to reconstruct networks and perform functional enrichment analyses. Movies created with GATE can be saved in Flash format and inserted directly into PDF manuscript files as interactive figures.
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